Arts of an SBML model definition can refer to it. A
Arts of an SBML model definition can refer to it. A parameter can also have an optional name attribute of type string. Identifiers and names have to be utilized based on the suggestions described in Section 3.three. four.9.two The worth attributeThe optional attribute worth determines the value (of typedouble) assigned towards the identifier. A missing worth implies that the worth either isAuthor Manuscript Author Manuscript Author Manuscript Author Manuscriptunknown, or to become obtained from an external supply, or determined by an initial assignment (Section 4.0) or possibly a rule (Section 4.) elsewhere within the model. A parameter’s worth is set by its worth attribute precisely once. When the parameter’s continuous attribute has the value ” true” (the default), then the value is fixed and cannot be changed except by an InitialAssignment. These two solutions of setting the parameter’s value differ in that the worth attribute can only be made use of to set it to a literal scalar worth, whereas InitialAssignment enables the PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/23153055 value to be set utilizing an arbitrary mathematical expression. In the event the parameter’s constant attribute has the worth ” false”, the parameter’s worth might be overridden by an InitialAssignment or changed by order β-Sitosterol β-D-glucoside AssignmentRule or AlgebraicRule, and additionally, for simulation time t 0, it might also be changed by a RateRule or Events. (Nevertheless, some of these constructs are mutually exclusive; see Sections four. and four.4.) It really is not an error to define value on a parameter as well as redefine the value applying an InitialAssignment, however the value in that case is ignored. Section 3.4.8 provides added information concerning the semantics of assignments, rules and values for simulation time t 0. four.9.three The units attributeThe units linked using the worth with the parameter are specified by the attribute units. The worth assigned for the parameter’s units attribute must be chosen from on the list of following possibilities: among the list of base unit identifiers from TableJ Integr Bioinform. Author manuscript; out there in PMC 207 June 02.Hucka et al.Page on page 38; among the list of predefined unit identifiers appearing in initially column of Table 2 on web page 42; or the identifier of a brand new unit defined in the list of unit definitions inside the enclosing Model definition. You’ll find no constraints around the units which will be selected from these sets. You will discover no default units for parameters. The units from the parameter are utilized within the following ways: When the parameter identifier appears in mathematical formulas expressed in MathML in a model, the units connected with all the worth are these declared by the parameter’s units attribute. The units of the math element of an AssignmentRule, InitialAssignment or EventAssignment setting the value from the parameter need to be identical towards the units declared by the parameter’s units attribute. The units on the math element of a RateRule that references the parameter need to be identical to parameter unitstime, exactly where parameter units would be the units declared for the parameter applying the units attribute and time could be the modelwide time units.Author Manuscript Author Manuscript Author Manuscript Author ManuscriptThe reality that parameter units are optional, and that no defaults are defined, implies that models can define parameters with undeclared units. If such parameters appear in mathematical expressions elsewhere in a model, it might not be probable for a computer software tool to verify the consistency of units utilised in the expressions. Modelers and software program tools should really as a result assign units to paramete.